PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_01668.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 217aa    MW: 23922.8 Da    PI: 7.1605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_01668.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2574.7e-183585155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             ++ykGVr ++ +g+Wv+eIr p   +k++r++lg++ tae Aa+a++ a ++l+g
  Rsa1.0_01668.1_g00003.1 35 KKYKGVRMRS-WGSWVSEIRAP---NKKTRIWLGSYSTAEAAARAYDVALLCLKG 85
                             59*****998.**********9...347************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.1813693IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-313695IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-203694IPR016177DNA-binding domain
SMARTSM003806.5E-353699IPR001471AP2/ERF domain
PfamPF008472.5E-113685IPR001471AP2/ERF domain
PRINTSPR003674.9E-93748IPR001471AP2/ERF domain
CDDcd000186.15E-283995No hitNo description
PRINTSPR003674.9E-95975IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MVKQELKIKK EMSLSSPSQS SPSSSSPKIK KNKIKKYKGV RMRSWGSWVS EIRAPNKKTR  60
IWLGSYSTAE AAARAYDVAL LCLKGPQANL NFPSSASSHP LLDEMTILSP KSIQKIAAQA  120
ANNSSDLFAL SSSAASSPSD HDHHPDDDGM QSLIGSFVDN HVSLMNPSSS WYDNEHNGMF  180
FFDDGAPFNY SPLLNSTTNM VDAYFYEDAD IPLWSFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-153593160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A6e-153398268ATERF1
2gcc_A6e-153398268ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013722103.11e-113PREDICTED: ethylene-responsive transcription factor ERF012-like
SwissprotQ9SFE48e-96ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBLA0A078JS931e-112A0A078JS93_BRANA; BnaAnng29870D protein
TrEMBLM4DIS31e-112M4DIS3_BRARP; Uncharacterized protein
STRINGBra016400.1-P1e-112(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29992767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.12e-85ERF family protein